ycnI [2019-01-04 11:33:39]

unknown

locus: BSU03940

pI: 4.83

mw: 21.97 kDa

protein length: 204 aa

gene length: 612 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 446,174 → 446,788

The protein

[SW|Localization]

• cell membrane (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|98D807FBB847BF731B5C236557C8F70347279CE0|ycnK]-[gene|D0F553E661A35C69380ACB01D9A96FC6C5088470|ycnJ]-[gene|1B7F59F954A1F20F75F5D4953F84CE58171741DE|ycnI]
  description: [Pubmed|22904286,22383849]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|22904286], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

  regulatory mechanism

  • [protein|98D807FBB847BF731B5C236557C8F70347279CE0|YcnK]: repression, [Pubmed|22904286,19168619], in [regulon|98D807FBB847BF731B5C236557C8F70347279CE0|YcnK regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|15101989], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

  regulation

  • induced by copper limitation ([protein|search|YcnK]) [Pubmed|22904286,19168619]

Biological materials

Mutant

• BKE03940 (Δ[gene|1B7F59F954A1F20F75F5D4953F84CE58171741DE|ycnI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03940 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACGTAAACACTCCTTAAT, downstream forward: _UP4_TAATAAAGAAAGCGATCCAG
• BKK03940 (Δ[gene|1B7F59F954A1F20F75F5D4953F84CE58171741DE|ycnI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03940 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACGTAAACACTCCTTAAT, downstream forward: _UP4_TAATAAAGAAAGCGATCCAG

References

• 22904286,22383849